amos storkey

publications

Theses, conferences and papers

For a djvu viewer go to djvuzone. Also, see my Terms for Reviewing if you wish me to review a paper.

For a more up to date list including arxiv preprints, see my Google Scholar profile.

A Bibtex file of my recent publications is available. The Bibtex keys are listed next to each publication.

2016

Pernet, Cyril R, Krzysztof J Gorgolewski, Dominic Job, David Rodriguez, Amos J Storkey, Ian Whittle, Joanna Wardlaw (2016) Evaluation of a pre-surgical functional MRI workflow: From data acquisition to reporting. International Journal of Medical Informatics, 86, p 37-42.

Edwards, Harrison and Amos J Storkey (2016) Censoring Representations with an Adversary. Accepted for publication International Conference in Learning Representations (ICLR2016).

2015

Ksenia A. Kuznetsova, Susana Munoz Maniega, Stuart J. Ritchie, Simon R. Cox, Amos J. Storkey, John M. Starr, Joanna M. Wardlaw, Ian J. Deary and Mark E. Bastin (2015) Brain white matter structure and information processing speed in healthy older age. Brain Structure and Function

Z. Zhu and A.J. Storkey (2015) Adaptive Stochastic Primal-Dual Coordinate Descent for Separable Saddle Point Problems. ECML/PKDD 2015.

A.J. Storkey, Z. Zhu and J. Hu. (2015) Aggregation Under Bias: Renyi Divergence Aggregation and its Implementation via Machine Learning Markets. ECML/PKDD 2015.

C.R. Buchanan and L.D. Pettit and A. J. Storkey and S. Abrahams and M.E. Bastin (2015) Reduced structural connectivity within a prefrontal-motor-subcortical network in amyotrophic lateral sclerosis. Journal of Magnetic Resonance Imaging 41, p. 1342-1352.

2014

Hu, Jinli and A.J. Storkey (2014) Multi-period Trading Prediction Markets with Connections to Machine Learning. ICML 2014.

Clark, C. and A.J. Storkey (2014) Training Deep Convolutional Networks to Play Go. Proc. Arxiv (Nov 2014), ICML 2015.

Dai, A.M. and A.J. Storkey (2014) The supervised hierarchical Dirichlet process. IEEE Pattern Analysis and Machine Intelligence PP:99 p1. Special Issue on Bayesian Nonparametrics.

Lyons, S., S. Särkkä and A.J. Storkey (2014) Series Expansion Approximations of Brownian Motion for Non-Linear Kalman Filtering of Diffusion Processes. Accepted for publication in IEEE Signal Processing.

Buchanan, Colin R., Cyril R Pernet, Krzysztof J Gorgolewski, Amos J Storkey and Mark E Bastin (2014) Test-retest reliability of structural brain networks from diffusion MRI. NeuroImage, 86, 01.02.2014, p. 231-243.

2013

Reichert, D.P. and P. Series and A. J. Storkey (2013) Charles Bonnet Syndrome: Evidence for a generative model in the cortex? PLOS Computational Biology 9(7): e1003134. doi:10.1371/journal.pcbi.1003134.

Gorgolewski, K.J., A.J. Storkey, M.E. Bastin, I.R. Whittle, J.M. Wardlaw, C.R. Pernet (2013) A test-retest functional MRI dataset for motor, language and spatial attention functions. GigaScience Database. Dataset.
Bibtex key: gorgolewski_et_al_test_retest_dataset.

Kitching, T. et al (2013) Image analysis for cosmology: results from the GREAT10 Star Challenge. Astrophysical Journal Supplement Series 205 12. pdf.
Bibtex key: kitching_etal_great10_results.

K.J. Gorgolewski, A.J. Storkey, M.E. Bastin, I. Whittle, C. Pernet (2013) Single subject fMRI test-retest reliability metrics and confounding factors. Neuroimage 69 231-243. pdf.
Bibtex key: gorgolewski_storkey_single_subject_test_retest

2012

Lyons, S., S. Särkkä and A.J. Storkey (2012) The coloured noise expansion and parameter estimation of diffusion processes. Advances in Neural Information Processing Systems 25 (NIPS2012). pdf.
Bibtex key: lyons_sarkka_storkey_coloured_noise

Zhang, Y., C. Sutton, A.J. Storkey and Z. Ghahramani (2012) Continuous relaxations for discrete Hamiltonian Monte-Carlo. Advances in Neural Information Processing Systems 25 (NIPS2012). pdf.
Bibtex key: zhang_sutton_storkey_ghahramani_dicrete_hmc

Gorgolewski, K.J., A.J. Storkey, M.E. Bastin, C.R. Pernet (2012) Adaptive thresholding for reliable topological inference in single subject fMRI analysis. Frontiers in Human Neuroscience 6 Article 245. Doi 10.3389/fnhum.2012.00245. pdf.
Bibtex key: gorgolewski_storkey_adaptive_theshold

Storkey, A.J., J. Millin and K.J. Geras (2012) Isoelastic agents and wealth updates in machine learning markets. Proceedings of ICML 2012. pdf.
Bibtex key: storkey_isoelastic_mlmarkets

Spiliopoulou, A. and A.J. Storkey (2012) A topic model for melodic sequences. Proceedings of ICML 2012. pdf.
Bibtext key: spiliopoulou_storkey_topic_melodic_sequences

Agakov, F.V. and P. Orchard and A.J. Storkey (2012) Discriminative mixtures of sparse latent fields for stress testing. In Proceeedings of AISTATS 2012. pdf.
Bibtex key: agakov_storkey_sparse_mixtures_stress_test

2011

Reichert, D.P. and P. Series and A. J. Storkey (2011) Neuronal Adaptation for sampling-based probabilistic inference in perceptual bistability. In Advances in Neural Information Processing Systems 24. pdf.
Bibtex key: reichert_storkey_neuronal_adaptation_bistabiliity

Storkey, A.J. (2011) Machine Learning Markets. In Proceedings of AI and Statistics 2011. pdf.
Bibtex key: storkey_mlmarkets

Spiliopoulou, A. and A. J. Storkey (2011) Comparing probabilistic models for melodic sequences. In Proceedings of ECML,PKDD 2011. pdf.
Bibtex key: spiliopoulou_storkey_melodic_sequences

Clayden, J.D., S. Munoz Maniega, A.J. Storkey, M.D. King, M.E. Bastin and C.A. Clark (2011) Tractor: Magnetic resonance imaging and tractography with R. Journal of Statistical Software 44(8), 1-18. pdf.
Bibtex key: clayden_storkey_tractor

Reichert D.P., P. Series and A.J. Storkey (2011) A Hierarchical Generative Model of Recurrent Object-Based Attention in the Visual Cortex. In Proceedings of ICANN 2011. pdf.
Bibtex key: reichert_storkey_generative_attention_visual_cortex

Dai A. and A.J. Storkey (2011) The Grouped Author-Topic Model for Unsupervised Entity Resolution. In Proceedings of ICANN 2011. pdf.
Bibtex key: dai_storkey_grouped_author_topic

Murray L. and A.J. Storkey (2011) Particle smoothing in continuous time: a fast approach via density estimation. IEEE Transactions in Signal Processing 59 3, 1017-1026. pdf.
Bibtex key: murray_storkey_particle_smoothing_density_estimation

Toussaint M., A.J. Storkey, S. Harmeling (2011) Expectation-Maximization methods for solving (PO)MDPs and optimal control problems. In Silvia Chiappa, David Barber (Eds.): Bayesian Time Series Models, Cambridge University Press. pdf.
Bibtext key: toussaint_storkey_em_pomdp

2010

Reichert D.P., P. Series and A.J. Storkey (2010) Hallucinations in Charles Bonnet Syndrome Induced by Homeostasis: a Deep Boltzmann Machine Model. In J. Lafferty and C. K. I. Williams and J. Shawe-Taylor and R.S. Zemel and A. Culotta (Eds) Advances in Neural Information Processing Systems 23 (NIPS2010), 2020-2028. pdf.
Bibtex key: reichert_storkey_charles_bonnet

Agakov F.V., P. McKeigue, J. Krohn and A.J. Storkey (2010) Sparse Instrumental Variables (SPIV) for Genome-Wide Studies. In J. Lafferty and C. K. I. Williams and J. Shawe-Taylor and R.S. Zemel and A. Culotta (Eds) Advances in Neural Information Processing Systems 23 (NIPS2010), 28-36. pdf.
Bibtex key: agakov_storkey_spiv

2009

Clayden J.D., A.J. Storkey, S. Munoz Maniega and M.E. Bastin (2009) Reproducibility of tract segmentation between sessions using an unsupervised modelling-based approach. Neuroimage 45, 377-385. pdf.
Bibtex key: clayden_storkey_reproducibility

Storkey, A.J. (2009) When training and test sets are different: characterising learning transfer. In Dataset Shift in Machine Learning, Eds Candela, Sugiyama, Schwaighofer, Lawrence. MIT Press. pdf.
Bibtex key: storkey_dataset_shift.

2008

Bastin, M., J.P. Piatowski, A.J. Storkey, L.J. Brown, A.M. Maclullich and J.D. Clayden (2008) Tract shape modelling provides evidence of topological change in corpus callosum genu during normal ageing. Neuroimage 43: 20-28. pdf.
Bibtex key: bastin_storkey_tract_shape_change_normal_aging

Murray, L. and A.J. Storkey (2008) Continuous Time Particle Filtering for fMRI. Advances in Neural Information Processing Systems 20 (NIPS 2007). pdf.
Bibtex key: murray_storkey_fmri

Williams, B., M. Toussaint and A.J. Storkey (2008) Modelling motion primitives and their timing in biologically executed movements. Advances in Neural Information Processing Systems 20 (NIPS 2007). pdf.
Bibtex key: williams_storkey_motion_primitives

2007

Clayden, J.D., A.J. Storkey and M.E. Bastin (2007). A Probabilistic Model-based Approach to Consistent White Matter Tract Segmentation. IEEE Transactions on Medical Imaging 26(11):1555-1561. pdf.
Bibtex key: clayden_storkey_consistent_tract_segmentation.

Williams, B., M. Toussaint and A.J. Storkey (2007) A primitive based generative model to infer timing information in unpartitioned handwriting data, Proceedings of IJCAI 2007. Pdf, djvu.

Storkey, A.J., E. Simonotto, H. Whalley, S. Lawrie, L. Murray and D. McGonigle (2007) Learning structural equation models for fMRI. In Advances in Neural Information Processing Systems 19 (NIPS2006). Pdf, Djvu.

Storkey A.J., M. Sugiyama (2007) Mixture regression for covariate shift. In Advances in Neural Information Processing Systems 19 (NIPS2006). Pdf, djvu.

Clayden, J.D., A.J. Storkey and M.E. Bastin (2007) A probabilistic model-based approach to consistent white matter tract segmentation. Proceedings of the ISMRM 15th Scientific Meeting and Exhibition.

2006

M. Toussaint, S. Harmeling and A.J. Storkey (2006) Probabilistic inference for solving (PO)MDPs. Informatics Research Report 0934. Pdf, djvu.

Clayden, J.D., M.E. Bastin and A.J. Storkey (2006). Improved segmentation reproducibility in group tractography using a quantitative tract similarity measure. Neuroimage 33(2):482-92. Pdf, djvu.

Williams, B., M. Toussaint and A.J. Storkey (2006) Extracting motion primitives from natural handwriting Data. Proceedings of the International Conference on Artificial Neural Networks. Pdf (436K), djvu (131K).

M. Toussaint and A.J. Storkey (2006) Probabilistic inference for solving discrete and continuous state Markov Decision Processes. Accepted for publication in Proceedings of 23nd International Conference on Machine Learning (ICML 2006). Postscript (1MB), gzipped postscript (290K), pdf (443K), djvu (135K).

Clayden, J.D., M. E. Bastin and A.J. Storkey (2006) Neighbourhood tractography: a new approach to seed point placement for group fibre tracking. Proceedings of the British Chapter of the ISMRM.

Clayden, J.D., M. E. Bastin and A.J. Storkey (2006) Automated assessment of tract similarity in group diffusion MRI data. Proceedings of the ISMRM 14th Scientific Meeting and Exhibition.

2004

Duncan, H., A. Bundy, J. Levine, A.J. Storkey and M. Pollet (2004) The use of data mining for the automatic formation of tactics. Proceedings of the Workshop on Computer-Supported Mathematical Theory Development held at the Second International Joint Conference on Automated Reasoning (IJCAR-04), Cork.

Storkey, A.J and M. Allan (2004) Cosine transform priors for enhanced decoding of compressed images. Proceedings of Fifth International Conference on Intelligent Data Engineering and Automated Learning (IDEAL2004). Postscript (2317K), gzipped postscript (791K), pdf (153K), gzipped pdf (120K), djvu (94K).

Williams, C.K.I., A.J. Storkey, N.C. Hambly, R.G. Mann (2004) Cleaning Astronomical Databases using Hough Transforms and Renewal Strings. In Proceedings of the Mathematical Methods in Scattering Theory and Biomedical Technology, 6

Storkey A.J. (2004) Generalised propagation for Fast Fourier Transforms with partial or missing data. In Advanced Neural Information Processing Systems 16 (NIPS2003). Postscript (300K), pdf (160K), gzipped Postscript (130K), djvu (67K). There is some further relevant information at the Bayesian Fourier Transform site, and at the Bayesian Fourier Transform Demos site.

Storkey A.J., N.C. Hambly, C.K.I. Williams, R.G. Mann (2004) Cleaning sky survey databases using Hough transform and renewal string approaches. Monthly Notices of the Royal Astronomical Society, 347, pages 36-51. Postscript (8.6M), gzipped postscript (3.8M), pdf (3.1M), gzipped pdf (2.9M), djvu (579K).

2003

Storkey A.J., N.C. Hambly, C.K.I. Williams, R.G. Mann (2003) Renewal strings for cleaning astronomical databases. In Uncertainty in Artificial Intelligence 19 (UAI-2003), pages 559-566. Postscript (2.7MB), gzipped Postscript (800KB), pdf (800KB), gzipped pdf (790KB), djvu (204KB).

Storkey A.J. and C.K.I. Williams (2003) Image modelling with position-encoding dynamic trees. In IEEE Pattern Analysis and Machine Intelligence 25 7, 859-872. IEEE Computer Society. Pdf abstract, postscript (1.1M), pdf (396K), gzipped postscript (313K), gzipped pdf (343K), djvu (299K).

Storkey A.J. (2003) Dynamic structure super-resolution. In Advances in Neural Information Processing Systems 15 (NIPS2002), 1295-1302. postscript (923K), pdf (115K), gzipped postscript (370K), gzipped pdf (98K). djvu (85K). Comment: the pdf version seems to have compressed the images in a way that means the final results figures are not quite correct.

2002 and earlier

Mann R.G., R. Williams, M. Atkinson, K. Brodlie, A.J. Storkey and C.K.I. Williams (2002) Scientific Data Mining, Integration and Visualisation. Technical Report UKeS-2002-06, National E-Science Centre. Postscript (1.7M), gzipped postscript (720K), pdf (161K), gzipped pdf (139K), djvu (236K).

Felderhof S.N., A.J. Storkey and C.K.I. Williams (2001) Position Encoding Dynamic Trees for Image Sequence Analysis. Technical Report, School of Informatics, University of Edinburgh.

Adams N.J., C.K.I. Williams and A.J. Storkey (2001) Comparing mean field and exact EM in tree-structured belief networks. Proceedings of Fourth International ICSC Symposium on Soft Computing and Intelligent Systems for Industry, June 2001. Postscript (357K), pdf (168K), gzipped postscript (76K), gzipped pdf (76K).

Storkey A.J. and C.K.I. Williams (2001) Dynamic positional trees for structural image analysis, in proceedings of AISTATS2001. Postscript (1521K), pdf (297K), gzipped postscript (167K), gzipped pdf (191K).

Storkey A.J. (2000) Dynamic Trees: A structured variational method giving efficient propagation rules, in Uncertainty in Artificial Intelligence (UAI2000). Postscript (259K) , pdf (209K), gzipped postscript (83K), gzipped pdf (116K), djvu (98K).

Adams N.J., A.J. Storkey, Z. Ghahramani and C.K.I. Williams (2000) MFDT: Mean field dynamic trees, presented at the International Conference on Pattern Recognition (ICPR2000). Postscript (292K), pdf (133K), gzipped postscript (61K), gzipped pdf (91K).

Storkey A.J. (1999) Truncated covariance matrices and Toeplitz methods in Gaussian processes, in ICANN99: Artificial Neural Networks. pages 55-60. Postscript (3746K), pdf (824K), gzipped postscript (699K), gzipped pdf (541K).

Storkey A.J. (1999) Efficient Covariance Matrix Methods for Bayesian Gaussian Processes and Hopfield Neural Networks. PhD Thesis. University of London. (138 pages) Postscript (8976K), gzipped postscript (1649K), djvu (960K).

Storkey A.J. and R. Valabregue (1999) The basins of attraction of a new Hopfield learning rule, Neural Networks 12 869-876. (23 Pages). Postscript (507K), pdf (201K), gzipped postscript (92K), gzipped pdf (102K).

Storkey A.J. (1998) Gaussian processes for switching regimes. ICANN98 p621-626. Springer. Postscript (303K), pdf (162K), gzipped postscript (63K), gzipped pdf (84K).

Storkey A.J. (1998) Palimpsest memories: a new high capacity forgetful learning rule. Report. (9 pages). Postscript (342K), pdf (171K), gzipped postscript (69K), gzipped pdf (82K).

Storkey A.J. and R. Valabregue (1997) A new learning rule with high capacity storage of time-correlated patterns, Electronic Letters 33 1803-1804. (8 pages). Postscript (130K) , pdf (114K), gzipped postscript (32K), gzipped pdf (44K).

Storkey A.J. (1997) Increasing the capacity of the Hopfield network without sacrificing functionality, ICANN97 p451-456. Postscript (128K), pdf (142K), gzipped postscript (39K), gzipped pdf (59K).

Browne C., J.L.P. Castro and A.J. Storkey (1996) A modified spreading algorithm for autoassociation in weightless neural networks, ICANN96

Storkey A.J. (1996) The Fractal and Multifractal Nature of Traffic, UTSG Conference, January 1996.

Storkey A.J. (1995) Fractals and Chaos in Traffic Flows, MSc Thesis, Imperial College


 
 
Amos Storkey 2000-2013.

Satellite Track

Spurious record detection methods are included in the SuperCOSMOS Science Archive

Drago illusion

Build your own inverted face illusion.