As part of the time-series analysis, the Bio-PEPA Eclipse Plug-in allows you to create and save experiments, which you can re-run later. The user may choose to have the results of the experiments plotted on the same or separate graphs, or for them to be stored in a comma-separated values (.csv) file (see Figure 26).
One of the options offered by the experimentation feature of the Bio-PEPA Eclipse Plug-in allows the user to disable one or more of the reactions of the model. For example, in Figure 27 the user has chosen to disable the reaction of the a-b-c.biopepa model described in section 8.1. The results of the experiment are shown in Figure 28.
Additionally, the user may alter the initial populations of the species of the Bio-PEPA model by providing, either a set of comma-separated values, or a range of values. In Figure 29, the user has provided two comma-separated values for the initial population of species of the a-b-c.biopepa model, 40 and 50. The resulting graphs for this experiment are shown in Figure 30.
Finally, the user may alter the values of the rate (kinetic) variables of the model by providing, either a set of comma-separated values, or a range of values. In Figure 31, the user has provided a range of values for kinetic parameter of the a-b-c.biopepa model, by setting a start value of 0.0050, a stop value of 0.01 and a step of 0.0050. The resulting graphs for this experiment are shown in Figure 32.