Bio-PEPA Workbench

News: August 25th, 2008

Bio-PEPA Workbench slides A new version of the Bio-PEPA Workbench was released today, Version 0.9.9 "Chad Smith". The features offered by this release are described in the user manual. The software can be obtained from the download page.

A presentation on this release of the Bio-PEPA workbench is available. This presentation describes the mechanism to support bifurcation and continuatuion analysis of Bio-PEPA models.

About the Bio-PEPA Workbench

The Bio-PEPA Workbench is an implementation of Bio-PEPA which allows modellers to write models in the Bio-PEPA language and to animate them using stochastic simulation.

The Bio-PEPA Workbench uses the StochKit stochastic simulation toolkit to perform exact stochastic simulations using Gillespie's SSA algorithm.


The Bio-PEPA Workbench was developed for the SIGNAL project ("Stochastic process algebra for biochemical signalling pathway analysis") funded by the UK Engineering and Physical Sciences Research Council and the Bio-PEPA project within the Centre for Systems Biology at Edinburgh, funded by the EPSRC and BBSRC.