News: August 25th, 2008
A new version of the Bio-PEPA Workbench was released today, Version 0.9.9 "Chad Smith". The features offered by this release are described in the user manual. The software can be obtained from the download page.A presentation on this release of the Bio-PEPA workbench is available. This presentation describes the mechanism to support bifurcation and continuatuion analysis of Bio-PEPA models.
About the Bio-PEPA Workbench
The Bio-PEPA Workbench is an implementation of Bio-PEPA which allows modellers to write models in the Bio-PEPA language and to animate them using stochastic simulation.
The Bio-PEPA Workbench uses the StochKit stochastic simulation toolkit to perform exact stochastic simulations using Gillespie's SSA algorithm.
The Bio-PEPA Workbench was developed for the SIGNAL project ("Stochastic process algebra for biochemical signalling pathway analysis") funded by the UK Engineering and Physical Sciences Research Council and the Bio-PEPA project within the Centre for Systems Biology at Edinburgh, funded by the EPSRC and BBSRC.